Class RnaStructureGraph
An undirected graph representing an RNA structure.

Defined in <seqan/rna_io.h>
Signature class RnaStructureGraph;

Member Variable Overview

Detailed Description

Storage of a graph that contains base pairs and their probabilities of an RNA structure. The associated specs string describes the method that was used to obtain the RNA structure.

Member Variables Detail

float RnaStructureGraph::energy

Energy of the RNA structure.

Graph<Undirected<double>> RnaStructureGraph::inter

Undirected graph for base pairings of the RNA structure.

The vertices denote the sequence/alignment column index. Edges are drawn among all pairing nucleotides. An edge's cargo represents the probability for the respective pairing.

CharString RnaStructureGraph::specs

Specs of the Method used to compute the bpp matrix or the structure.