Plot customizable linear genomes displaying arbitrary data


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Documentation for package ‘karyoploteR’ version 1.30.0

Help Pages

addGeneNames addGeneNames
autotrack autotrack
colByCategory colByCategory
colByChr colByChr
colByRegion colByRegion
colByValue colByValue
darker darker
filterParams filterParams
findIntersections findIntersections
getChromosomeNamesBoundingBox getChromosomeNamesBoundingBox
getColorSchemas getColorSchemas
getCytobandColors getCytobandColors
getCytobands getCytobands
getDataPanelBoundingBox getDataPanelBoundingBox
getDefaultPlotParams getDefaultParameters
getMainTitleBoundingBox getMainTitleBoundingBox
getTextSize getTextSize
getVariantsColors getVariantsColors
horizonColors horizonColors
is.color is.color
kpAbline kpAbline
kpAddBaseNumbers kpAddBaseNumbers
kpAddChromosomeNames kpAddChromosomeNames
kpAddChromosomeSeparators kpAddChromosomeSeparators
kpAddColorRect kpAddColorRect
kpAddCytobandLabels kpAddCytobandLabels
kpAddCytobands kpAddCytobands
kpAddCytobandsAsLine kpAddCytobandsAsLine
kpAddLabels kpAddLabels
kpAddMainTitle kpAddMainTitle
kpArea kpArea
kpArrows kpArrows
kpAxis kpAxis
kpBars kpBars
kpDataBackground kpDataBackground
kpHeatmap kpHeatmap
kpLines kpLines
kpPlotBAMCoverage kpPlotBAMCoverage
kpPlotBAMDensity kpPlotBAMDensity
kpPlotBigWig kpPlotBigWig
kpPlotCoverage kpPlotCoverage
kpPlotDensity kpPlotDensity
kpPlotGenes kpPlotGenes
kpPlotHorizon kpPlotHorizon
kpPlotLinks kpPlotLinks
kpPlotLoess kpPlotLoess
kpPlotManhattan kpPlotManhattan
kpPlotMarkers kpPlotMarkers
kpPlotNames kpPlotNames
kpPlotRainfall kpPlotRainfall
kpPlotRegions kpPlotRegions
kpPlotRibbon kpPlotRibbon
kpPlotTranscripts kpPlotTranscripts
kpPoints kpPoints
kpPolygon kpPolygon
kpRect kpRect
kpSegments kpSegments
kpText kpText
lighter lighter
makeGenesDataFromTxDb makeGenesDataFromTxDb
mergeTranscripts mergeTranscripts
plotDefaultPlotParams plotDefaultPlotParameters
plotKaryotype plotKaryotype
plotPalettes plotPalette
prepareParameters2 prepareParameters2
prepareParameters4 prepareParameters4
processClipping processClipping
transparent transparent