gtfToExons | Convert GTF file to exon location file |
makeBranchpointWindowForExons | Make branchpoint window regions |
makeBranchpointWindowForSNP | Makes a branchpointer formatted GRanges object from refsnp ids |
plotBranchpointWindow | Plots branchpointer predictions |
predictBranchpoints | Predict branchpoint probability scores |
predictionsToSummary | Convert SNP branchpoint predictions across the branchpoint window to an intronic summary |
readQueryFile | Read a query file |