advChar |
adverSCarial class |
advChar-class |
adverSCarial class |
advGridMinChange |
Grid search of min change adversarial attack. Tries each combination on a cluster, given a list of genes and a list of modifications. |
advList |
adverSCarial class |
advList-class |
adverSCarial class |
advMaxChange |
Find a max change adversarial attack. It finds the longer list of genes you can modify on a cluster without changing its classification. |
advModifications |
Returns a modified RNA expression DelayedMatrix, or a modified SingleCellExperiment, for a given cluster, for a given modification. |
advRandWalkMinChange |
Random walk search of min change adversarial attack. |
advSingleGene |
Find a one gene min change adversarial attack list. A one gene min change adversarial attack refers to the modification of a single gene within a cluster, leading to a change in its classification. The function returns a list of genes/new classification. |
matrixFromSCE |
Returns the RNA expression matrix from a SingleCellExperiment with unique hgnc gene names in columns |
maxChangeOverview |
Gives an overview of the susceptibility to max change attacks, for each cell type, for a given list of modifications. |
MClassifier |
Example cell type classifier for pbmc clustered datasets. |
predictWithNewValue |
Returns a classification and an odd value from a RNA expression DelayedMatrix or a SingleCellExperiment object, for given genes, for a given cluster, for a given modification. |
sceConvertToHGNC |
Returns a SingleCellExperiment object keeping unique HGNC gene |
singleGeneOverview |
Gives an overview of the susceptibility to single gene attacks, for each cell type, for a given list of modifications. |